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Our paper on RA Macrophages is now online at @ScienceTM! stm.sciencemag.org/content/11/491… Very grateful to mentors at @HSpecialSurgery > Ivashkiv and Donlin Labs and @csatet > @gxr @gxrlab; collaborators @FanZhang_Jessie and @soumya_boston and many others
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Congrats @akkah21 @gxr and team!
Indexing All Life's Known Biological Sequences biorxiv.org/content/10.110… metagraph.ethz.ch/search
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dkuo retweeted
Are you wrestling with this missing data pattern? While single-cell experiments provide deep cellular resolution within a single sample, bulk experiments have sequenced more (rare) diseases, perturbations, and patient populations. BuDDI is here to help! biorxiv.org/content/10.110…
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Aaron Rodgers entering his darkness retreat again
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A rewarding team effort to define how T cell activation by checkpoint therapy can result in an INDUCIBLE HUMAN AUTOIMMUNE CONDITION - which resembles rheumatoid arthritis.
A new study by @SingarajuAnvita @KB_PhD @Deepakarao @Donlinlab and colleagues identifies a T cell population as a reason for why some types of immune checkpoint inhibitor immunotherapies can cause arthritis to emerge in some patients.

📄: scim.ag/3wO
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🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵.

The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be
explored and retrieved as #SingleCellExperiment. Please RT!

-> stemangiola.github.io/CuratedAtlasQu…
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This paper is finally out in eLife! The process of getting published was exhausting, but I feel refreshed after submitting to eLife. It got very insightful reviews you can all enjoy! Still working on a response, but since it's eLife you can see them now!
elifesciences.org/reviewed-prepr…
Happy to share our new @bioarxiv pre-print “Analysis of scientific journalism in Nature reveals gender and regional disparities in coverage”

We analyzed the text of 22,001 news articles to see if we observed any disparities (spoiler: we did)

biorxiv.org/content/10.110…
🧵
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Our recent work on sequence-to-graph alignment in metagenomics using longer inexact seeds biorxiv.org/content/10.110…
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dkuo retweeted
Congrats to my former ⁦@Harvard⁩ bandmate ⁦@CarolynBertozzi⁩ on her ⁦@NobelPrize⁩ in chemistry! We won the Ivy League Battle of the Bands in 1986 with our rockin’ group ‘Bored Of Education’, with her on keyboards & me in spandex. news.stanford.edu/2022/10/05/car…
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cc @kwangbom ;)
This blue Lobster was caught off the coast of Portland yesterday and returned to the water to continue to grow. Blue lobsters are one in two million.
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Barcodes, barcodes everywhere @carroll_jono
This deck of cards has a bar code printed on the edge of each card. Scanning these bar codes would reveal where every card is (or isn't - if cards are missing.)

Think card magic.

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Thought this was about @JuliaLanguage ....
For your consideration - #Julia - the Max Original Comedy Series that Decider raves is “Heartwarming & Delicious”
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Do you remember when you joined Twitter? I didn't until Twitter reminded me. #MyTwitterAnniversary
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Wordle 200 5/6

🟩⬛⬛🟨⬛
🟩🟨🟨⬛⬛
🟩⬛🟨🟨🟩
🟩🟩⬛🟩🟩
🟩🟩🟩🟩🟩
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Wordle 199 4/6

⬛⬛⬛⬛🟨
⬛🟨🟨⬛⬛
⬛🟨⬛🟨🟨
🟩🟩🟩🟩🟩
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dkuo retweeted
Very happy to announce the upcoming International Genome Graph Symposium, July 3-7 in Ascona, CH. With a very exciting lineup of keynote speakers, we are looking forward to inspiring discussions at a unique location. Pre-register now at iggsy.org. Please RT #iggsy22
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dkuo retweeted
Finally out in @NatureRevGenet: Navigating the pitfalls of applying machine learning in genomics! go.nature.com/3D55JuZ w/ @seawhalen et al.

Our key point: you MUST evaluate your models in the same setting you want them to be used or they might not actually work in practice.
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dkuo retweeted
I was telling my students today about how Derrick Bell left Harvard Law because they refused to hire any women of color.

I asked my class if they knew who was the first woman of color they hired.

I tried to keep a straight face then my TA BUST out laughing. 🤣🤣🤣
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We launched our lab website over the weekend: lehmannlab.org

Check it out especially the upcoming open PhD/Postdoc opportunities! #hiring #AcademicTwitter

Also big thanks to our webmaster (@joyceykao) for designing the lab logos and building the website!
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The lab is open for business and we are #hiring!!!

If the analysis and method development of multi-modal biomedical data with a focus on oncology sounds interesting to you, check out the ad and apply online:
bit.ly/LehmannLabPost…

#MachineLearning #CancerResearch
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dkuo retweeted
The COVID-19 Virus Explained phdcomics.com/comics.php?f=2…
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