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Introducing organellomics - a systems-level view of human cell architecture with 24 organelles. AI-driven ๐—ก๐—ข๐—ฉ๐—” (๐—กeuronal ๐—ขrganellomics ๐—ฉision ๐—”tlas) encodes organelle patterns in 1.5M+ neuron images, enabling holistic insights in cellular biology
biorxiv.org/content/10.110โ€ฆ
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Hi friends!๐Ÿ˜Ž I'm excited to share that after 7 amazing yrs as a PhD student and postdoc at @HornsteinLab, I'm starting my next chapter as a formal postdoc in @rolls_asya's lab @TelAvivUni. I'll be exploring systems #Cancer #Neuroscience using diverse cool TC and mouse models๐Ÿ๐Ÿฆ€
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Replying to @DaninoYehuda
@DaninoYehuda @rolls_asya @TelAvivUni Good luck Yehuda, you will be highly missed and we wish you much success in Rolls lab
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Hornstein Lab retweeted
TDP-43 may play a role in neurodegenerative disorders such as #alzheimersdisease and #parkinsonsdisease, even in the absence of detectable aggregates. @UKDRI @Cambridge_Uni @WeizmannScience @EmoryMedicine ow.ly/thRc50X1sgM
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Busy times ahead. I apologize in advance for potentially taking longer to respond to e-mails for a few years...
Congratulations to Prof. @IgorUlitsky of the Department of Immunology and Regenerative Biology, upon being appointed as the new Dean of the Faculty of Biology. Prof. Ulitsky will assume his role on December 1, 2025
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Replying to @IgorUlitsky
@IgorUlitsky Huge congratulations! ๐ŸŽ‰
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Hornstein Lab retweeted
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IsomiR Utility in ALS Prognostication medrxiv.org/cgi/content/shโ€ฆ #medRxiv
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Hornstein Lab retweeted
Super excited to finally see this published! Our new method to use combinatorial staining and deep learning to push the multiplexing boundaries of spatial proteomics!
High-dimensional imaging using combinatorial channel multiplexing and deep learning go.nature.com/4hGPfO0
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Big news: we are setting up a new non-profit organization to run bioRxiv and medRxiv. It's called openRxiv [no it's not a new preprint server; it's a dedicated organization to oversee the servers] openrxiv.org 1/n
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Excited to share our preprint: "๐Ž๐ซ๐ ๐š๐ง๐ž๐ฅ๐ฅ๐จ๐ฆ๐ข๐œ๐ฌ: ๐€๐ˆ-๐๐ซ๐ข๐ฏ๐ž๐ง ๐๐ž๐ž๐ฉ ๐จ๐ซ๐ ๐š๐ง๐ž๐ฅ๐ฅ๐š๐ซ ๐ฉ๐ก๐ž๐ง๐จ๐ญ๐ฒ๐ฉ๐ข๐ง๐  ๐ซ๐ž๐ฏ๐ž๐š๐ฅ๐ฌ ๐ง๐จ๐ฏ๐ž๐ฅ ๐€๐‹๐’ ๐ฆ๐ž๐œ๐ก๐š๐ง๐ข๐ฌ๐ฆ๐ฌ ๐ข๐ง ๐ก๐ฎ๐ฆ๐š๐ง ๐ง๐ž๐ฎ๐ซ๐จ๐ง๐ฌ"
๐Ÿš€๐•๐ข๐ฌ๐ข๐จ๐ง-๐ญ๐ซ๐š๐ง๐ฌ๐Ÿ๐จ๐ซ๐ฆ๐ฌ-๐›๐š๐ฌ๐ž๐ ๐จ๐ซ๐ ๐š๐ง๐ž๐ฅ๐ฅ๐š๐ซ ๐ฉ๐ก๐ž๐ง๐จ๐ญ๐ฒ๐ฉ๐ข๐ง๐  ๐ฎ๐ง๐ฏ๐ž๐ข๐ฅ๐ฌ ๐ก๐ข๐๐๐ž๐ง ๐€๐‹๐’ ๐ฆ๐ž๐œ๐ก๐š๐ง๐ข๐ฌ๐ฆ๐ฌ!

๐Ÿงต Thread on ๐˜•๐˜–๐˜๐˜ˆ (๐˜•๐˜ฆ๐˜ถ๐˜ณ๐˜ฐ๐˜ฏ๐˜ข๐˜ญ ๐˜–๐˜ณ๐˜จ๐˜ข๐˜ฏ๐˜ฆ๐˜ญ๐˜ญ๐˜ฐ๐˜ฎ๐˜ช๐˜ค๐˜ด ๐˜๐˜ช๐˜ด๐˜ช๐˜ฐ๐˜ฏ ๐˜ˆ๐˜ต๐˜ญ๐˜ข๐˜ด)๐ŸŽ—๏ธ our deep-learning model trained with ~3M images of human-derived neurons, and newly discovered insights into ALS disease. We used AI to map cellular dysfunction at un unprecedented resolution, comprehensively studying all sub-cellular organelles.

Preprint: "๐Ž๐ซ๐ ๐š๐ง๐ž๐ฅ๐ฅ๐จ๐ฆ๐ข๐œ๐ฌ: ๐€๐ˆ-๐๐ซ๐ข๐ฏ๐ž๐ง ๐๐ž๐ž๐ฉ ๐จ๐ซ๐ ๐š๐ง๐ž๐ฅ๐ฅ๐š๐ซ ๐ฉ๐ก๐ž๐ง๐จ๐ญ๐ฒ๐ฉ๐ข๐ง๐  ๐ซ๐ž๐ฏ๐ž๐š๐ฅ๐ฌ ๐ง๐จ๐ฏ๐ž๐ฅ ๐€๐‹๐’ ๐ฆ๐ž๐œ๐ก๐š๐ง๐ข๐ฌ๐ฆ๐ฌ ๐ข๐ง ๐ก๐ฎ๐ฆ๐š๐ง ๐ง๐ž๐ฎ๐ซ๐จ๐ง๐ฌ"
biorxiv.org/content/10.110โ€ฆ

Check out our code and data: github.com/Sagykri/NOVA
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Hornstein Lab retweeted
Delighted to share new work from our lab:
MultiPerturb-seq ๐ŸŽ›๏ธโŒ๐Ÿ“ฅ๐Ÿ“ค

Over the last few years, we've been combining CRISPR screens with multimodal readouts of gene expression (RNA) and chromatin accessibility (DNA). In this study, we bring those together within the same cells.
Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling go.nature.com/4hXER5O
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Hornstein Lab retweeted
The pure joy in Gaza as Iranian missiles cover the sky above Tel Aviv.
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Hornstein Lab retweeted
At AAIC 2024, phospho-tau assays look ready for primary and secondary care. @lunduniversity @wustl @BannerAlzheimer ow.ly/QPzg50SV3Tp
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A phase Ib/IIa study of Enoxacin in patients with ALS medrxiv.org/cgi/content/shโ€ฆ #medRxiv
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Replying to @HornsteinLab
@medrxivpreprint Plasma and CSF throughout the entire treatment period of 30 days, supporting the use of microRNAs as a pharmacodynamic marker of target engagement. These results enocurage larger and longer trials to test Enoxacin efficacy in patients with #ALS.
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Replying to @HornsteinLab
@medrxivpreprint This work is based on a pre-clinical study from the lab, by PhD student Dr. Anna Emde in @EMBO: embopress.org/doi/full/10.15โ€ฆ, and was performed in close collaboration with Dr. Angela Genge from @TheNeuro_MNI who ran the clinical trial.
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Hornstein Lab retweeted
A phase Ib/IIa study of Enoxacin in patients with ALS medrxiv.org/cgi/content/shโ€ฆ #medRxiv
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Hornstein Lab retweeted
Interested in 3' UTR changes in scRNA-seq? Check out our:
* CPA-Perturb-seq paper
* UCSC Perturb-seq tracks (see who regulates your favorite 3โ€™ UTR!)
* Seurat extension for polyA site analysis (PASTA)
* Deep neural perturbation network (APARENT-Perturb)
cell.com/cell/fulltext/โ€ฆ
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Hornstein Lab retweeted
Birth of a neuron. Stem cell transforming into a brain cell:

#neuroscience
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Hornstein Lab retweeted
Human brain anatomy:

#neuroscience
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Hornstein Lab retweeted
My team is working with a substantial arsenal of ML algorithms, analyzing diverse human molecular data. The most intriguing work imaginable. We do science and study human brain diseases, but like a small startup.
Come join us!
We're hiring! Biomedical Data Science Researcher to develop ML/AI tools and investigate molecular mechanisms underlying neurodegeneration.

Position details and requirements: machinelearning.co.il/job/biomedicalโ€ฆ

CV to Eran.hornstein@weizmann.ac.il / Nancyy@weizmann.ac.il

#jobopportunity
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We're hiring! Biomedical Data Science Researcher to develop ML/AI tools and investigate molecular mechanisms underlying neurodegeneration.

Position details and requirements: machinelearning.co.il/job/biomedicalโ€ฆ

CV to Eran.hornstein@weizmann.ac.il / Nancyy@weizmann.ac.il

#jobopportunity
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