📂 Bring your own data to VEuPathDB! User-uploaded datasets are a new feature. They can help you explore your research questions and get more out of our resources.
That's on Day 4 of the upcoming VEuPathDB Virtual Workshop! tinyurl.com/24phufm4
That's on Day 4 of the upcoming VEuPathDB Virtual Workshop! tinyurl.com/24phufm4
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📊 Explore the world of omics data with VEuPathDB!
Join Day 3 of our FREE Virtual Workshop to discover how to explore and analyze:
🧪 Transcriptomics
🔬 Proteomics
🧫 Single-cell RNA-seq
🧬 Orthology
Experienced instructors will guide you throughout!
tinyurl.com/24phufm4
Join Day 3 of our FREE Virtual Workshop to discover how to explore and analyze:
🧪 Transcriptomics
🔬 Proteomics
🧫 Single-cell RNA-seq
🧬 Orthology
Experienced instructors will guide you throughout!
tinyurl.com/24phufm4
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🧬 Take a closer look at genomes with us!
Join Day 2 of the FREE VEuPathDB Virtual Workshop to explore the genome browser and learn how to interpret gene models by weighing lines of evidence.
BONUS on this day: All about downloading data!
Register: tinyurl.com/24phufm4
Join Day 2 of the FREE VEuPathDB Virtual Workshop to explore the genome browser and learn how to interpret gene models by weighing lines of evidence.
BONUS on this day: All about downloading data!
Register: tinyurl.com/24phufm4
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The @veupathdb virtual workshop is 5 weeks away! 🌟
Day 1 gives a big picture overview of our resources and tools, then dives into data mining, search strategies, and how best to access our vast data stores.
Short lectures + Demos + Hands-on exercises
Registration is open!
Day 1 gives a big picture overview of our resources and tools, then dives into data mining, search strategies, and how best to access our vast data stores.
Short lectures + Demos + Hands-on exercises
Registration is open!
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📣 Registration is open for the FREE 2026 VEuPathDB Virtual Workshop!
Join us online December 8–11 for four days of hands-on training with VEuPathDB.
✏️ Register by December 4: upenn.co1.qualtrics.com/jfe/form/SV_0S…
#VEuPathDB #Bioinformatics #Parasites #fungi #vectors #VirtualWorkshop
Join us online December 8–11 for four days of hands-on training with VEuPathDB.
✏️ Register by December 4: upenn.co1.qualtrics.com/jfe/form/SV_0S…
#VEuPathDB #Bioinformatics #Parasites #fungi #vectors #VirtualWorkshop
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An example of a question you can now answer in a few clicks 🧬
Which Toxoplasma gondii genes show unusually high levels of protein-altering variation, and what do they have in common?
Try the new @veupathdb search for Short Variant Characteristics: veupathdb.org/veupathdb/app/…
Which Toxoplasma gondii genes show unusually high levels of protein-altering variation, and what do they have in common?
Try the new @veupathdb search for Short Variant Characteristics: veupathdb.org/veupathdb/app/…
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What can you filter on in the new @veupathdb Short Variant Characteristics search?
📊 Variant burden: SNVs, indels, variants/kb
🧪 Consequence: missense, LoF, most severe impact
📈 Allele frequency: common, singleton variants
⚖️ Diversity & selection + 🔍 Sampling depth
📊 Variant burden: SNVs, indels, variants/kb
🧪 Consequence: missense, LoF, most severe impact
📈 Allele frequency: common, singleton variants
⚖️ Diversity & selection + 🔍 Sampling depth
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New in @veupathdb: Search for Genes by Short Variant Characteristics 🧬
Find genes by the amount, type & distribution of their SNVs and small indels across sampled strains, with 16 characteristics to filter on.
Try it now: Searches > Genes > Genetic variation
Find genes by the amount, type & distribution of their SNVs and small indels across sampled strains, with 16 characteristics to filter on.
Try it now: Searches > Genes > Genetic variation
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Biological data resources are in peril. Funding for the databases researchers rely on every day is shrinking.
If @veupathdb is part of your work, please ask your lab or institution to subscribe. Your support keeps us going. 💙
veupathdb.org/veupathdb/app/…
If @veupathdb is part of your work, please ask your lab or institution to subscribe. Your support keeps us going. 💙
veupathdb.org/veupathdb/app/…
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Your data, your call. With My Datasets on @veupathdb, you choose who sees it: just you, your collaborators, or everyone.
Add rich metadata so public datasets are easy to find and reuse, and meet funder & journal data-sharing requirements.
Try it! veupathdb.org/veupathdb/app/…
Add rich metadata so public datasets are easy to find and reuse, and meet funder & journal data-sharing requirements.
Try it! veupathdb.org/veupathdb/app/…
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Uploading your data comes with help.
My Datasets on @veupathdb now has:
✅ Checks for RNA-seq & bigWig files before upload
📖 A Help tab that walks you through prepping data
🤖 An AI Metadata Analyzer for RNA-seq raw counts
Give it a try: veupathdb.org/veupathdb/app/…
My Datasets on @veupathdb now has:
✅ Checks for RNA-seq & bigWig files before upload
📖 A Help tab that walks you through prepping data
🤖 An AI Metadata Analyzer for RNA-seq raw counts
Give it a try: veupathdb.org/veupathdb/app/…
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What can you upload to My Datasets on @veupathdb? 📊
• RNA-seq counts (raw or normalized)
• Phenotype data
• bigWig tracks
• Gene lists
• Generic data tables
All of it connects to data already integrated!
Take a look: veupathdb.org/veupathdb/app/…
• RNA-seq counts (raw or normalized)
• Phenotype data
• bigWig tracks
• Gene lists
• Generic data tables
All of it connects to data already integrated!
Take a look: veupathdb.org/veupathdb/app/…
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Got your own data? With My Datasets, you can import it into @veupathdb and explore it alongside our genomic and functional data. Keep it private, share it with collaborators, or get it ready for public release if you choose. 🧬 veupathdb.org/veupathdb/app/…
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VEuPathDB is free to use, but not free to run. 💙
Our existence, upkeep and new features (like Diff Exp!) depend on subscriptions from the communities we serve.
Has your lab or institution subscribed for 2026?
veupathdb.org/veupathdb/app/…
#data #OpenScience
Our existence, upkeep and new features (like Diff Exp!) depend on subscriptions from the communities we serve.
Has your lab or institution subscribed for 2026?
veupathdb.org/veupathdb/app/…
#data #OpenScience
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Before you trust a gene list, look at your samples. 👀
Increase your confidence in your results by examining the experimental samples using PCA, built into VEuPathDB's new DE search.
Click on a DE button to try it-
veupathdb.org/veupathdb/app/…
#RNAseq #data
Increase your confidence in your results by examining the experimental samples using PCA, built into VEuPathDB's new DE search.
Click on a DE button to try it-
veupathdb.org/veupathdb/app/…
#RNAseq #data
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New on @veupathdb: differential expression analysis in your browser, no coding required. 🧬
Explore differential expression data using PCA & volcano plots and generate gene lists for further analysis.
TRY IT! Click on a DE button-
veupathdb.org/veupathdb/app/…
#RNAseq #data
Explore differential expression data using PCA & volcano plots and generate gene lists for further analysis.
TRY IT! Click on a DE button-
veupathdb.org/veupathdb/app/…
#RNAseq #data
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A few weeks ago, VEuPathDB Release 71 went live! 🚀
Read the release notes to learn more this milestone release featuring all ✨new software infrastructure ✨ veupathdb.org/veupathdb/app/…
Stay tuned as we highlight new features in the coming weeks! #Bioinformatics #data
Read the release notes to learn more this milestone release featuring all ✨new software infrastructure ✨ veupathdb.org/veupathdb/app/…
Stay tuned as we highlight new features in the coming weeks! #Bioinformatics #data
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The webinar recording is live! 📺
If you're interested in uploading your own phenotype data into VEuPathDB platforms, check out our session covering phenotype data basics, how to integrate it, and how to explore it alongside other data.
Watch it here: youtube.com/watch?v=-H1I3f…
If you're interested in uploading your own phenotype data into VEuPathDB platforms, check out our session covering phenotype data basics, how to integrate it, and how to explore it alongside other data.
Watch it here: youtube.com/watch?v=-H1I3f…
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📣 Reminder! Our webinar THIS WED, May 13, 2 pm UTC will demonstrate how to upload ✨your own✨ gene lists, phenotype data, etc. privately to @veupathdb @fungidb @VectorBase and query it alongside our vast, curated resources.
Register today: upenn.zoom.us/meeting/regist…
Register today: upenn.zoom.us/meeting/regist…
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Looking for new ways to explore and analyze your own data? Our webinar will demo how to upload your gene lists, phenotype data, etc. to @veupathdb @fungidb sites and query it alongside our vast, curated resources- Wed, May 13, 2 pm UTC.
Register now! upenn.zoom.us/meeting/regist…
Register now! upenn.zoom.us/meeting/regist…
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