This is Scott; my contract working on GMOD related tasks (including JBrowse, Chado, and Tribal) and other projects like wormbase.org and alliancegenome.org is likely to come to and end soon. If you know of anybody looking for help with things like this, (1/2)

(2/2) Please steer them my way. My resume and publication list are on my personal website: scottca.in

Frontend Developer position
Required to apply @ usajobs.gov/job/771349000
-Responsible for designing, developing, testing, & debugging responsive web applications
-Using #javascript , HTML, CSS, GitHub, Jekyll & Liquid
#JobOpening #Hybrid #FrontEndDeveloper

#JBrowse2 workshop about to start at #pag31 in town and country D. Get some updates and a hands on tutorial for setting up your own JBrowse 2!

Did you know that you could get variant analysis, methylation and phasing in a single data analysis workflow? #EPI2ME human variation workflow, best practice @nanopore data analysis, with great reports and integrated genome browser. #nanoporeconf

I created a Colab tutorial that checks if a gene/transcript ID has an associated crystal structure, checks if related proteins with associated crystal structures are available, and then compares those to a de novo structure prediction:

colab.research.google.com/github/pachter…

The application even includes jbrowse2 for no fuss viewing of read alignments straight. Analysis a manual review in a single application.

jbrowse.org/jb2/

I am happy to announce that the #JBrowse2 paper has be published in Genome Bio. There is lots of cool stuff: synenty, structural variation, plugins, multi chromosome and multi genome views, a graphical configuration editor, a desktop and easy-to-embed apps genomebiology.biomedcentral.com/articles/10.11…

Here's figure 1 to whet your appetite.

(Geez, squeezing the description of this figure into 1000 characters was hard!)

During the #Soybean Breeders Workshop the SoyBase team asked the workshop attendees to vote for their favorite SoyBase.org tool. The word cloud was created from the community's votes.
#soybeans #plantbreeding #research #GenomeBrowser #BLAST

It's that time again: I'm going to start bugging people for letters of support for the @usejbrowse project. If you have time and are a #JBrowse user, please consider writing a letter. JBrowse is a big part of many genomics projects, and we want to make sure it continues to grow.

My friends at CIRAD Montpellier, France are looking for bioinformatics web developer familiar with #GMOD tools (@TripalProject @galaxyproject, @usejbrowse) to work on a rubber and palm tree genome project: recrutement.cirad.fr/job/emploi-ing…

To go along with the #JBrowse2 tutorial at #PAG30, we also have three talks by JBrowse folks:

@rbuels gave an intro: youtu.be/oxdhe_ZLGYs

@cmdcolin gave an overview of features: youtu.be/jl0BzcBhGqk

Caroline Bridge talked about the plugins: youtu.be/hJmV97odZ1w

At #PAG30 earlier this month, we presented a hands on #JBrowse2 tutorial, where the attendees logged into a server, ran through setting up a JBrowse 2 instance and added a lot of data, including #synteny and #structuralVariation gmod.org/wiki/JBrowse2_…

#GMOD at #PAG today: #JBrowse workshop 1:30 in T&C D (including hands on tutorial), #JBrowse from an implementer's perspective in Next Gen Annotation in Pacific E at 4:20 (blaze!)

Join the #tripal folks for their #PAG30 session: plan.core-apps.com/pag_2023/event… Topics include v4, biocuration, #jbrowse integration, intro to planosphere.stowers.org , and a retrospective by @FicklinStephen

Darn it, I forgot to include useful things like time and location (I've gotten used to longer posts elsewhere so was worried about keeping it brief!): the session is at 4:00 in Town & Country D (the computer demo room)

Also available in #bioconda :-)
Thanks @usejbrowse team!